Publications

Explore our publications and research findings in genomics research.

• RNA-Seq: a revolutionary tool for transcriptomics
  Zhong Wang, Mark Gerstein, Michael Snyder
  Nature Reviews Genetics , 2009
  [Paper] |
• MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
  Dongwan D Kang, Jeff Froula, Rob Egan, Zhong Wang
  PeerJ , 2015
  [Paper] | [Code]
• MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
  Dongwan D Kang, Feng Li, Edward Kirton, Ashleigh Thomas, Rob Egan, Hong An, Zhong Wang
  PeerJ , 2019
  [Paper] | [Code]
• DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
  Yanrong Ji*, Zhihan Zhou*, Han Liu, Ramana V Davuluri
  Bioinformatics , 2021
  [Paper] | [Code]
• DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
  Zhihan Zhou, Yanrong Ji, Weijian Li, Pratik Dutta, Ramana Davuluri, Han Liu
  Preprint , 2023
  [Paper] | [Code]